Package: KRMM 1.1

KRMM: Kernel Ridge Mixed Model

Solves kernel ridge regression, within the the mixed model framework, for the linear, polynomial, Gaussian, Laplacian and ANOVA kernels. The model components (i.e. fixed and random effects) and variance parameters are estimated using the expectation-maximization (EM) algorithm. All the estimated components and parameters, e.g. BLUP of dual variables and BLUP of random predictor effects for the linear kernel (also known as RR-BLUP), are available. The kernel ridge mixed model (KRMM) is described in Jacquin L, Cao T-V and Ahmadi N (2016) A Unified and Comprehensible View of Parametric and Kernel Methods for Genomic Prediction with Application to Rice. Front. Genet. 7:145. <doi:10.3389/fgene.2016.00145>.

Authors:Laval Jacquin [aut, cre]

KRMM_1.1.tar.gz
KRMM_1.1.zip(r-4.5)KRMM_1.1.zip(r-4.4)KRMM_1.1.zip(r-4.3)
KRMM_1.1.tgz(r-4.4-any)KRMM_1.1.tgz(r-4.3-any)
KRMM_1.1.tar.gz(r-4.5-noble)KRMM_1.1.tar.gz(r-4.4-noble)
KRMM_1.1.tgz(r-4.4-emscripten)KRMM_1.1.tgz(r-4.3-emscripten)
KRMM.pdf |KRMM.html✨
KRMM/json (API)

Peer review:

Bug tracker:https://github.com/ljacquin/krmm/issues

On CRAN:

blupgblupgenomic-predictionkernel-methodsmixed-modelsvariance-components-estimation

4 exports 1 stars 1.46 score 11 dependencies 1 mentions 10 scripts 139 downloads

Last updated 19 days agofrom:9e3138f8e8. Checks:OK: 1 ERROR: 6. Indexed: yes.

Exports:em_reml_mmkrmmpredict_krmmtune_krmm

Dependencies:codetoolscvToolsDEoptimRdoParallelforeachiteratorskernlablatticeMASSMatrixrobustbase